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CD90/Thy-1, a Cancer-Associated Cell Surface Signaling Molecule

CD90 is a membrane GPI-anchored protein with one Ig V-type superfamily domain that was initially described in mouse T cells. Besides the specific expression pattern and functions of CD90 that were described in normal tissues, i.e., neurons, fibroblasts and T cells, increasing evidences are currently highlighting the possible involvement of CD90 in cancer. This review first...

Integrative Bioinformatic Analysis of Transcriptomic Data Identifies Conserved Molecular Pathways Underlying Ionizing Radiation-Induced Bystander Effects (RIBE)

from the DAAD Grant “DNA Damage and Repair and Their Relevance to Carcinogenesis” (No 57339330). Efstathios-Iason Vlachavas, Eleftherios Pilalis, and Aristotelis Chatziioannou acknowledge support from ... ”. Author Contributions: Aristotelis Chatziioannou, Alexandros G. Georgakilas and Constantinos E. Vorgias conceived the study. Aristotelis Chatziioannou designed and supervised the in-silico; Constantinos

Comparative Meta-Analysis of Transcriptomics Data during Cellular Senescence and In Vivo Tissue Ageing

Several studies have employed DNA microarrays to identify gene expression signatures that mark human ageing; yet the features underlying this complicated phenomenon remain elusive. We thus conducted a bioinformatics meta-analysis on transcriptomics data from human cell- and biopsy-based microarrays experiments studying cellular senescence or in vivo tissue ageing, respectively...

Comparative Meta-Analysis of Transcriptomics Data during Cellular Senescence and In Vivo Tissue Ageing

Several studies have employed DNA microarrays to identify gene expression signatures that mark human ageing; yet the features underlying this complicated phenomenon remain elusive. We thus conducted a bioinformatics meta-analysis on transcriptomics data from human cell- and biopsy-based microarrays experiments studying cellular senescence or in vivo tissue ageing, respectively...

Comparative Meta-Analysis of Transcriptomics Data during Cellular Senescence and In Vivo Tissue Ageing

Several studies have employed DNA microarrays to identify gene expression signatures that mark human ageing; yet the features underlying this complicated phenomenon remain elusive. We thus conducted a bioinformatics meta-analysis on transcriptomics data from human cell- and biopsy-based microarrays experiments studying cellular senescence or in vivo tissue ageing, respectively...

Metagenomic mining for thermostable esterolytic enzymes uncovers a new family of bacterial esterases

Aristotelis Chatziioannou in:Nature Research journals • PubMed • Google ScholarSearch for Ilya Kublanov in:Nature Research journals • PubMed • Google ScholarSearch for Georgios Skretas in:Nature Research ... . Author information AffiliationsInstitute of Biology, Medicinal Chemistry & Biotechnology, National Hellenic Research Foundation, Athens, GreeceDimitra Zarafeta, Evangelia D. Chrysina, Aristotelis

Application of an Integrative Computational Framework in Trancriptomic Data of Atherosclerotic Mice Suggests Numerous Molecular Players

Atherosclerosis is a multifactorial disease involving a lot of genes and proteins recruited throughout its manifestation. The present study aims to exploit bioinformatic tools in order to analyze microarray data of atherosclerotic aortic lesions of ApoE knockout mice, a model widely used in atherosclerosis research. In particular, a dynamic analysis was performed among young and...

Application of an Integrative Computational Framework in Trancriptomic Data of Atherosclerotic Mice Suggests Numerous Molecular Players

Atherosclerosis is a multifactorial disease involving a lot of genes and proteins recruited throughout its manifestation. The present study aims to exploit bioinformatic tools in order to analyze microarray data of atherosclerotic aortic lesions of ApoE knockout mice, a model widely used in atherosclerosis research. In particular, a dynamic analysis was performed among young and...

Application of an Integrative Computational Framework in Trancriptomic Data of Atherosclerotic Mice Suggests Numerous Molecular Players

Atherosclerosis is a multifactorial disease involving a lot of genes and proteins recruited throughout its manifestation. The present study aims to exploit bioinformatic tools in order to analyze microarray data of atherosclerotic aortic lesions of ApoE knockout mice, a model widely used in atherosclerosis research. In particular, a dynamic analysis was performed among young and...

A Comparative Genomic Study in Schizophrenic and in Bipolar Disorder Patients, Based on Microarray Expression Profiling Meta-Analysis

 Aristotelis Chatziioannou,2 and Fragiskos Kolisis3 1Neuropsychiatric Research Laboratory, Department of Clinical Medicine, Örebro University, 701 82 Örebro, Sweden 2Metabolic Engineering and Bioinformatics

A Comparative Genomic Study in Schizophrenic and in Bipolar Disorder Patients, Based on Microarray Expression Profiling Meta-Analysis

 Aristotelis Chatziioannou,2 and Fragiskos Kolisis3 1Neuropsychiatric Research Laboratory, Department of Clinical Medicine, Örebro University, 701 82 Örebro, Sweden 2Metabolic Engineering and Bioinformatics

Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB

Aristotelis Chatziioannou 0 Panagiotis Moulos 0 Fragiskos N Kolisis 0 0 Address: Metabolic Engineering and Bioinformatics Group, Institute of Biological Research and Biotechnology, National

Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB

, GreeceAristotelis Chatziioannou, Panagiotis Moulos & Fragiskos N Kolisis AuthorsSearch for Aristotelis Chatziioannou in:PubMed • Google Scholar Search for Panagiotis Moulos in:PubMed • Google Scholar Search for

Discovery and Characterization of a Thermostable and Highly Halotolerant GH5 Cellulase from an Icelandic Hot Spring Isolate

With the ultimate goal of identifying robust cellulases for industrial biocatalytic conversions, we have isolated and characterized a new thermostable and very halotolerant GH5 cellulase. This new enzyme, termed CelDZ1, was identified by bioinformatic analysis from the genome of a polysaccharide-enrichment culture isolate, initiated from material collected from an Icelandic hot...

KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database

Chatziioannou 0 Ilias Maglogiannis 2 Fragiskos N Kolisis 0 0 Metabolic Engineering and Bioinformatics Group, Institute of Biological Research and Biotechnology, National Hellenic Research Foundation , Vassileos

KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database

Scholar Search for Ioannis Kanaris in:PubMed • Google Scholar Search for Aristotelis Chatziioannou in:PubMed • Google Scholar Search for Ilias Maglogiannis in:PubMed • Google Scholar Search for Fragiskos ... N Kolisis in:PubMed • Google Scholar Corresponding author Correspondence to Aristotelis Chatziioannou. Additional information Authors' contributions KM co-drafted the manuscript, co-programmed

Evolving DNA methylation and gene expression markers of B-cell chronic lymphocytic leukemia are present in pre-diagnostic blood samples more than 10 years prior to diagnosis

B-cell chronic lymphocytic leukemia (CLL) is a common type of adult leukemia. It often follows an indolent course and is preceded by monoclonal B-cell lymphocytosis, an asymptomatic condition, however it is not known what causes subjects with this condition to progress to CLL. Hence the discovery of prediagnostic markers has the potential to improve the identification of subjects...

A transcriptomic computational analysis of mastic oil-treated Lewis lung carcinomas reveals molecular mechanisms targeting tumor cell growth and survival

Background Mastic oil from Pistacia lentiscus variation chia, a blend of bioactive terpenes with recognized medicinal properties, has been recently shown to exert anti-tumor growth activity through inhibition of cancer cell proliferation, survival, angiogenesis and inflammatory response. However, no studies have addressed its mechanisms of action at genome-wide gene expression...