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7 papers found.
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Development of the ECODAB into a relational database for Escherichia coli O-antigens and other bacterial polysaccharides†

Escherichia coli O-antigen database (ECODAB) is a web-based application to support the collection of E. coli O-antigen structures, polymerase and flippase amino acid sequences, NMR chemical shift data of O-antigens as well as information on glycosyltransferases (GTs) involved in the assembly of O-antigen polysaccharides. The database content has been compiled from scientific...

GlycoCD: a repository for carbohydrate-related CD antigens

Summary: The open access comprehensive GlycoCD database application is for representation and retrieval of carbohydrate-related clusters of differentiation (CDs). The main objective of this database platform is to provide information about interactions of carbohydrate moieties with proteins that are important for identification of specific cell surface molecule with a focus on...

Symbol Nomenclature for Graphical Representations of Glycans

Carolyn R Bertozzi 2 11 Marilynn E Etzler 4 11 Martin Frank 0 17 29 Johannes FG Vliegenthart 0 16 29 Thomas Lütteke 0 20 21 29 Serge Perez 22 23 29 Evan Bolton 24 25 29 Pauline Rudd 26 27 James Paulson 32

Toolboxes for a standardised and systematic study of glycans

Background Recent progress in method development for characterising the branched structures of complex carbohydrates has now enabled higher throughput technology. Automation of structure analysis then calls for software development since adding meaning to large data collections in reasonable time requires corresponding bioinformatics methods and tools. Current glycobioinformatics...

pdb-care (PDB CArbohydrate REsidue check): a program to support annotation of complex carbohydrate structures in PDB files

Background Carbohydrates are involved in a variety of fundamental biological processes and pathological situations. They therefore have a large pharmaceutical and diagnostic potential. Knowledge of the 3D structure of glycans is a prerequisite for a complete understanding of their biological functions. The largest source of biomolecular 3D structures is the Protein Data Bank...

Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB

Knowledge of the 3D structure of glycoproteins and protein–carbohydrate complexes is indispensable to fully understand the biological processes they are involved in. Carbohydrate Structure Suite is an attempt to automatically analyse carbohydrate structures contained in the PDB and make the results publicly available on the internet. Characteristic torsion angles, glycoprotein...

EUROCarbDB: An open-access platform for glycoinformatics

The EUROCarbDB project is a design study for a technical framework, which provides sophisticated, freely accessible, open-source informatics tools and databases to support glycobiology and glycomic research. EUROCarbDB is a relational database containing glycan structures, their biological context and, when available, primary and interpreted analytical data from high-performance...