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A transwell assay that excludes exosomes for assessment of tunneling nanotube-mediated intercellular communication

Tunneling nanotubes (TNTs) are naturally-occurring filamentous actin-based membranous extensions that form across a wide spectrum of mammalian cell types to facilitate long-range intercellular communication. Valid assays are needed to accurately assess the downstream effects of TNT-mediated transfer of cellular signals in vitro. We recently reported a modified transwell assay...

Identification, by systematic RNA sequencing, of novel candidate biomarkers and therapeutic targets in human soft tissue tumors

Human sarcomas comprise a heterogeneous group of more than 50 subtypes broadly classified into two groups: bone and soft tissue sarcomas. Such heterogeneity and their relative rarity have made them challenging targets for classification, biomarker identification, and development of improved treatment strategies. In this study, we used RNA sequencing to analyze 35 primary human...

S-MED: Sarcoma microRNA Expression Database

instance, in osteosarcomas, we noticed significant downregulation of miRNAs, which were associated with chromosome 14 (Venugopal Thayanithy, unpublished observation), whereas in rhabdomyosarcomas, we

MicroRNAs at the human 14q32 locus have prognostic significance in osteosarcoma

Background Deregulation of microRNA (miRNA) transcript levels has been observed in many types of tumors including osteosarcoma. Molecular pathways regulated by differentially expressed miRNAs may contribute to the heterogeneous tumor behaviors observed in naturally occurring cancers. Thus, tumor-associated miRNA expression may provide informative biomarkers for disease outcome...

MicroRNAs at the human 14q32 locus have prognostic significance in osteosarcoma

, Venugopal Thayanithy, Milcah C Scott contributed equally to this work. Declarations Acknowledgements This study was supported by grant P30 CA077598 from the National Cancer Institute, by a Faculty Research

Combinatorial Treatment of DNA and Chromatin-Modifying Drugs Cause Cell Death in Human and Canine Osteosarcoma Cell Lines

Downregulation of microRNAs (miRNAs) at the 14q32 locus stabilizes the expression of cMYC, thus significantly contributing to osteosarcoma (OS) pathobiology. Here, we show that downregulation of 14q32 miRNAs is epigenetically regulated. The predicted promoter regions of miRNA clusters at 14q32 locus showed no recurrent patterns of differential methylation, but Saos2 cells showed...

The COPI vesicle complex binds and moves with survival motor neuron within axons

Spinal muscular atrophy (SMA), an inherited disease of motor neuron dysfunction, results from insufficient levels of the survival motor neuron (SMN) protein. Movement of the SMN protein as granules within cultured axons suggests that the pathogenesis of SMA may involve defects in neuronal transport, yet the nature of axon transport vesicles remains enigmatic. Here we show that...

Human colon cancer profiles show differential microRNA expression depending on mismatch repair status and are characteristic of undifferentiated proliferative states

Aaron L Sarver Amy J French Pedro M Borralho Venugopal Thayanithy Ann L Oberg Kevin AT Silverstein Bruce W Morlan Shaun M Riska Lisa A Boardman Julie M Cunningham Subbaya Subramanian Liang

Human colon cancer profiles show differential microRNA expression depending on mismatch repair status and are characteristic of undifferentiated proliferative states

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