Geometric isotope effect of deuteration in a hydrogen-bonded host–guest crystal

Nature Communications, Feb 2018

Deuteration of a hydrogen bond by replacing protium (H) with deuterium (D) can cause geometric changes in the hydrogen bond, known as the geometric H/D isotope effect (GIE). Understanding the GIEs on global structures and bulk properties is of great importance to study structure–property relationships of hydrogen-bonded systems. Here, we report a hydrogen-bonded host–guest crystal, imidazolium hydrogen terephthalate, that exemplifies striking GIEs on its hydrogen bonds, phases, and bulk dielectric transition property. Upon deuteration, the donor–acceptor distance in the O–H···O hydrogen bonds in the host structure is found to increase, which results in a change in the global hydrogen-bonded supramolecular structure and the emergence of a new phase (i.e., isotopic polymorphism). Consequently, the dynamics of the confined guest, which depend on the internal pressure exerted by the host framework, are substantially altered, showing a downward shift of the dielectric switching temperature.

A PDF file should load here. If you do not see its contents the file may be temporarily unavailable at the journal website or you do not have a PDF plug-in installed and enabled in your browser.

Alternatively, you can download the file locally and open with any standalone PDF reader:

Geometric isotope effect of deuteration in a hydrogen-bonded host–guest crystal

NATURE COMMUNICATIONS | Geometric isotope effect of deuteration in a hydrogen-bonded host-guest crystal Chao Shi Xi Zhang Chun-Hua Yu Ye-Feng Yao Wen Zhang Deuteration of a hydrogen bond by replacing protium (H) with deuterium (D) can cause geometric changes in the hydrogen bond, known as the geometric H/D isotope effect (GIE). Understanding the GIEs on global structures and bulk properties is of great importance to study structure-property relationships of hydrogen-bonded systems. Here, we report a hydrogen-bonded host-guest crystal, imidazolium hydrogen terephthalate, that exemplifies striking GIEs on its hydrogen bonds, phases, and bulk dielectric transition property. Upon deuteration, the donor-acceptor distance in the O-H???O hydrogen bonds in the host structure is found to increase, which results in a change in the global hydrogen-bonded supramolecular structure and the emergence of a new phase (i.e., isotopic polymorphism). Consequently, the dynamics of the confined guest, which depend on the internal pressure exerted by the host framework, are substantially altered, showing a downward shift of the - dielectric switching temperature. D ification of molecules by replacing a protium atom (H) euteration is a chemical tool to provide minimal modwith a deuterium atom (D). Due to their differences in atomic mass, volume, and spin, the deuteration can exert significant influences on the chemical and physical properties of molecules, such as molecular spectroscopic signatures, kinetics, and equilibrium constants1?3. However, beyond the scope of molecules, the H/D isotope effect on molecular aggregates (i.e., crystal structures) and related bulk properties is not straightforward. A long-held assumption is that deuteration generally does not alter crystal structures4. This is true in most cases; however, there emerge several exceptions, which unjustifies this assumption. These exceptions have shown that different crystal structures, including oxalic acid dihydrate, a complex of pentachlorophenol and 4-methylpyridine, pyridine, and other5?7, upon deuteration, exhibit a phenomenon known as ?isotopic polymorphism?5. The occurrence of isotopic polymorphism in crystals seems serendipitous and unpredictable8. In particular, the relationship and transformation among the polymorphs under external stimuli (e.g., temperature and pressure) have been less investigated; however, these investigations could provide key clues to understand the interplays among intermolecular interactions in crystal packing (a central issue in crystal engineering). Hydrogen (H) bonds, as supramolecular synthons9, play a vital role in crystal engineering and become a more predictable approach to exhibit isotopic polymorphism. This is because deuteration of the H bond can cause geometric changes in the bond, which is known as the geometric H/D isotope effect (GIE)10, 11. This effect accumulates and transmits in the bulk structures of phases. The influence of the H/D isotope effect on the phase-related bulk properties also remains uncertain. A critical focus is structural phase transitions, which are often associated with the occurrence of bulk properties, such as ferroelectricity/antiferroelectricity12?16 and dielectric transitions17. In molecular dielectrics, manipulation and control of the dynamic order?disorder transitions of the components (molecules or ions), which are dominated by hierarchical intermolecular interactions, are very challenging tasks for the design and modification of these materials and have been long pursued. In some hydrogen-bonded ferroelectrics14, 18, 19, deuteration of H bonds can cause significant shifts of the phase transition temperatures (Ttr). For example, KD2PO4 shows a much higher Ttr than KH2PO4, in which the huge isotope effect (a temperature change of 107 K) has been associated with proton tunneling and/or a geometrical effect20?23. Furthermore, some other bulk physical properties, such as thermal behavior, elasticity, electroluminescence, magnetism, and even superconducting transition temperature24?27, can also be significantly influenced upon deuteration. In contrast, there are also many examples showing negligible isotope effects, such as the Ttr in some H-bonded ferroelectrics28 and switchable dielectrics29. These seemingly opposite phenomena suggest complex relationships between the H/D isotope effect and the bulk properties. From a structural viewpoint, the bulk properties rely on a specific molecular arrangement or crystal packing rather than the molecule itself. Therefore, the mechanism for deuteration of the molecules altering the intermolecular interactions and the phases is key to understanding and evaluating the H/D isotope effect on these bulk properties. However, comprehensive investigations on molecular structure?phase?property relationships of H/D isotope effects are very rare due to a lack of suitable model systems18, 19, 30. Our work focuses on molecule-based dielectrics that undergo structural phase-transition-driven dielectric transitions between relatively low-dielectric and high-dielectric states (LDS and HDS)17, 31?33, a type of recently identified switchable dielectrics as the electrical counterpart to magnetic spin crossover materials34, 35. The Ttr, as a key parameter to describe the dielectric switching temperature, is determined by motional changes of polar molecules between orientationally ordered (frozen) and dynamically disordered (melt-like) states in a crystal lattice17, 32. Herein, we establish a H-bonded host?guest model system, (Im)(TPA) (1; Im = imidazolium cation, TPA = hydrogen terephthalate monoanion), to demonstrate significant GIEs on H bonds, the phases (two and three phases before and after deuteration, respectively), and the bulk dielectric transition properties under variable-temperature conditions. The basic structural unit to exhibit the GIE is the characteristic short COO?H???OOC H bonds in the anionic channel-like host composed of TPA. Upon deuteration, significant geometric changes of the H bonds and the host structure modulate the dynamics and arrangement of the Im guest in the host channel, leading to isotopic polymorphism and a downward shift of the Ttr. The driving force for these changes is the GIE-induced internal (chemical) pressure on the host framework, which transmits this effect to the confined guest via intermolecular interactions. Results Synthesis and phase transitions. Crystals of 1 were grown from a solution containing imidazole and terephthalic acid. To study the GIE, we prepared the fully protonated compound 1-d0 and three partially deuterated isotopologs 1-d2, 1-d3, and 1-d5 (Fig. 1). According to the deuteration of the COO?H???OOC dimeric H bonds, the four compounds are classified as H isomorphs (1-d0 and 1-d3) or D isomorphs (1-d2 and 1-d5). They are stable up to 430 K, as shown by thermogravimetric analysis (TGA) (Supplementary Fig. 1). The phase transitions and H/D isotope effects in 1 were first revealed by differential scanning calorimetry (DSC) measurements (Fig. 2a and Supplementary Fig. 2a). The H isomorphs H H N H D N + H + H H N H H N D 1-d0 1-d2 H isomorphs D isomorphs CO2H CO2 _ CO2D CO2 _ D H N D D N + D + D D N H 1-d3 D N D 1-d5 CO2H CO2 _ CO2D CO2 _ Fig. 1 Chemical structure of 1. Isotopologs 1-d0, 1-d2, 1-d3, and 1-d5 (the subscript referring to the number of deuterium atoms in Im) are classified into H isomorphs and D isomorphs according to the deuteration state of the carboxyl group COOH. Note: Isotopologs refer to a group of compounds differing in the number and/or position of atom substitutions by isotopes, while isomorphs refer to crystals belonging to the same space group 33 K Phase II I Ttr Ttr2 1-d0 1-d5 300 320 340 380 400 300 320 340 380 400 showed the same thermal behavior with a Ttr centered at 397 K. The phases above and below the Ttr are designated phase I and II, respectively. The D isomorphs showed strikingly different thermal behavior from the H isomorphs. A new phase (phase III below Ttr2 = 350 K) emerges besides phase I and II (with Ttr1), corresponding to isotopic polymorphism. Phase II remains stable within a narrow temperature window of approximately 14 K. The downward shift in Ttr1 is approximately 33 K for the I?II phase transition from the H to D isomorphs. The I?II and II?III phase transitions in 1-d5 show second-order and first-order characteristics, respectively (Supplementary Fig. 2b, c). Comparing the Ttr values of the four isotopologs reveals that deuteration of the CH group of the Im cation does not affect the phases and Ttr, in contrast to deuteration of the OH and NH groups involved in Hbonding. GIE on the dielectric switching property. The dielectric constant (? = ???i??) of a molecular material microscopically relates mainly to the orientational polarization of the polar components in the low-frequency range (within MHz)36. Thermal responses of the dielectric constant not only provide insight into the mechanism of the dynamics of dipoles but also lead to a type of responsive dielectric materials with dielectric switching between relatively LDS and HDS17. The distinct dielectric transitions of 1 were compared between crystal (all discussed crystal directions were based on the structures at 413 K in phase I for ease of comparison) and powder samples (Fig. 2b and Supplementary Fig. 3). The dielectric transition temperatures coincided with the DSC results (Fig. 2a). The real part ?? of 1-d0 measured along the [010] cleavage plane shows a dielectric transition at the Ttr with a change from approximately 6 at 300 K to a peak value of 34, corresponding to a switching ratio of approximately 6. We ascribe the gradual rise in ?? below the Ttr to a pretransition effect32. Above the Ttr, ?? begins to decrease, reflecting competition between the dipole alignment and thermal disturbance. The normalized ?? value shows dielectric switching around the Ttr between the LDS (off) and HDS (on) (Supplementary Fig. 4). In contrast, for the as-grown (001) plate, ?? remains in a low state with a gradual increase from 6.8 at 300 K to 8.3 above the Ttr. This striking dielectric anisotropy indicates that the local polarization changes are confined in the [010] or b direction, which can be attributed to reorientations of the Im cation, as discussed below. The other H-isomorph 1-d3 shows the same behavior as that of 1-d0 (Supplementary Fig. 3). The D isomorphs 1-d2 and 1-d5 exhibit different dielectric transitions from those of the H isomorphs (Fig. 2b and Supplementary Fig. 3). A small change in ?? (from 6 at 340 K to 11 at 345 K) of approximately 5 occurs at Ttr2, corresponding to the II?III transition, which is thought to be due to a lattice distortion and relative displacement of the molecules. Then, ?? quickly increases to its maximum value of approximately 37 at Ttr1, corresponding to the I?II transition. The latter dielectric transition is similar to those of the H isomorphs, indicating that they share the same microscopic structural origin. However, the downward shift of approximately 33 K in Ttr1 reflects the H/D isotope effect on the dynamics of the guest, indicating a different mechanism from that of the H-bond-triggered properties in most reported ferroelectrics14, 18, 19. Crystal structures and isotopic polymorphism. To clarify the structural origins of the phase transitions and GIE, variabletemperature single-crystal X-ray diffraction analysis was performed on the phases of 1 (Supplementary Table 1). The H isomorphs, taking 1-d0 as an example, were found to crystallize in space group Pnma in phase I and P21/c in phase II. At 293 K (phase II), the carboxylate group (O1?C?O2) of TPA is in the plane of the benzene ring, whereas the carboxyl group (O3?C?O4) is obviously twisted from the ring plane with a dihedral angle of 15? (Fig. 3a). The hexagonal-like packing of the end-to-end-linked TPA monoanions is stabilized by H bonds (dO1???O3 of 2.469 ?) and ????? interactions (centroid distance of 3.845 ?) between neighboring TPA anions (Fig. 3b; Supplementary Tables 2?3), forming supramolecular channels (Fig. 3c, d and Supplementary Fig. 5). The donor?acceptor distance dO???O is characteristic of short/strong H bonds (dO???O of 2.4?2.5 ?)37?40. The Im cations residing in the channel adopt two orientations with a dihedral angle of approximately 89? and are approximately perpendicular to the TPA ring plane with a dihedral angle of approximately 81?. Weak intermolecular interactions between the guest and host can be seen in the 1-d0 structures derived by the Hirshfeld surface analysis41, 42 (Fig. 3c and Supplementary Fig. 6). In phase I (413 K; Supplementary Fig. 5), all atoms in TPA are coplanar; however, the O4 atom shows an elongated thermal ellipsoid perpendicular to the ring plane, which is evidence of thermal oscillations along the b-axis. The anionic chain remains stable with slightly increased intermolecular dO???O (2.492 ?) and centroid separation (3.930 ?) values. More strikingly, the Im ring is bisected by mirror symmetry perpendicular to the b-axis and refined by a two-site disordered model with two orientations. In addition to phases I and II, the D isomorphs show the additional phase III (P21/n) below 350 K, displaying a rare case of O1 O2 isotopic polymorphism in the measured temperature range of 113?350 K. For 1-d5, the new phase has a doubled unit cell compared to that of phase II (Fig. 4 and Supplementary Figs. 7?8; Supplementary Table 1). At 293 K, the two carboxylate groups of one of the two TPA anions in the asymmetric unit are twisted from the ring plane with dihedral angles of 24? (which is strikingly large) and 9?. There are two crystallographically independent Im cations in the channels, both of which show c o o c b b a 2.58 2.55 ) ? ( O O2.52 d 2.49 2.46 1.3 1.2 ) ? ( ?H1.1 O d 1.0 0.9 1-d0 Calcd. from 1H NMR data dO/N O / ? 1-d0 1-d5 marked positional and orientational changes compared to those in phase II. One of the Im cations is almost perpendicular to the TPA ring planes with dihedral angles of 90? and 85?, whereas the other Im shows dihedral angles of 67? and 62? to the TPA ring planes. The dihedral angle of the two adjacent Im cations is 82?, and their centroid?centroid distance is approximately 5.24 ?, which is much longer than the value of 4.99 ? for H-isomorph 1-d0 in phase II at 293 K. The corresponding H-bond pattern of the Im cations with TPA anions is thus completely different from that in 1-d0 (Fig. 4; Supplementary Table 2). In the H isomorph (1-d0), each Im is H bonded with two TPA anions in adjacent chains through two N?H???O H bonds, with dN???O values of 2.675 (2) and 2.847(2) ?. However, in the D isomorph (1-d5), the Hbond acceptors are changed to different TPA anions, and one of the O atoms is involved in two N?D???O bonds. GIEs on H bonds and supramolecular structures. There are two types of GIEs in H bonds11 (herein O?H???O): primary, which refers to a change in the position of H (dO?H), and secondary, which refers to a change in the distance between the donor and acceptor (dO???O) and which is also known as the Ubbelohde effect10. We first investigated the secondary GIE (the change in dO???O upon deuteration) from the X-ray diffraction data. For conciseness, a detailed comparison is provided only for 1-d0 and 1-d5 (Fig. 5a; Supplementary Table 2). In 1-d0, the dO???O value gradually increases as the temperature is increased, from approximately 2.470 ? in phase II to approximately 2.483 ? in phase I, due to thermal expansion. There are no sharp changes during the I?II phase transition. In contrast, in 1-d5, dO???O shows an average elongation of 0.03 ? in phase I compared with 1-d0. This elongation is not large but is responsible for the alteration of the H bonds of the Im guest with the host (Fig. 5c; Supplementary Table 2), showing a weakening in the local H-bonding interactions (i.e., internal pressure) of the Im guest in 1-d5 compared with those in 1-d0. This strikingly alters the dynamics of the Im guest and related dielectric switching properties of the D isomorphs, as shown above (a 33 K downward shift of the Ttr1). Furthermore, the II?III phase transition of 1-d5 shows an increase in dO???O to approximately 2.550/2.587 ? (two types of dO???O emerge in phase III of the D isomorphs), with an increase of approximately 0.100 ? compared with that of 1-d0, resulting in the occurrence of isotopic polymorphism. The primary GIE, that is, the position of the H/D atom in the O?H???O bond, is another key issue to fully understand the GIE on the H-bond geometry. In the difference Fourier maps of the diffraction data, one lobe of the electron density is found to be close to one of the two O atoms and can be assigned to the H/D atom (Supplementary Fig. 9). The distances between H/D and the two O atoms vary between approximately 1.1 and 1.4 ? (Fig. 5b; Supplementary Table 2) at different temperatures, indicating a non-central location of the H/D atom in the O???O H bond. The significantly elongated O?H distance is commonly found in strong H bonds37?40. The primary GIE is evidenced by the bond length difference ?d = dO?H?dO?D, which yields values of +0.10 ? at 293 K and +0.08 ? at 363 K (that is, the O?H???O bond is less asymmetric than the O?D???O bond). Using the correlation between dO???O and (dO?H?dH???O)/2 without correction for the anharmonic zero-point motions43?45 as an alternative method, the calculated dO?H is 1.058 ? for dO???O = 2.470 ? and dO?D is 1.018 ? for dO???O = 2.587 ? at 293 K, affording a roughly consistent but smaller value of ?d = +0.04 ? than the corresponding diffraction result (Fig. 5b). Notably, the X-ray diffraction data locates the electron density maxima of the H/D atoms. Accurate positions of the nuclei in the H/D atoms can be obtained only by neutron diffraction studies. The two techniques are complementary, and future studies using neutron diffraction would afford a chance to compare the two results46. As a comparison, the primary GIE is also examined by correlating the solid-state 1H NMR chemical shifts (Supplementary Fig. 10). The spectrum of 1-d0 acquired at room temperature shows a clear peak for the O?H???O H bond at 19.8 ppm, affording a calculated dO?H of 1.15 ? (Fig. 5b). This value is approximately 0.10 ? larger than the result derived from X-ray diffraction43. Dynamics of the Im guest. The combined dielectric and diffraction measurements suggested a dynamic order?disorder transition of the Im guest in the crystal. To gain a deeper understanding of the dynamics, we applied wide-line 2H NMR spectroscopy to the partially deuterated sample 1-d3, which shows the same properties as 1-d0. This spectroscopic technique can determine the geometry and frequency of rotational motions on a time-scale ranging from 10?8 to 10?4 s 47. The experimental 2H NMR patterns of 1-d3 change over a large temperature range, indicating that the Im cations exhibit significant reorientation in this temperature range (Fig. 6). Due to the geometric restriction from the crystal lattice, the energetic favorable motion model of the Im cation is the in-plane motions. We adopted an in-plane two-site jump motion model (Fig. 6a and Supplementary Table 4) to explain the change in the shapes of the patterns obtained experimentally. In searching for the motion model of the Im cations, we realized that the three D atoms of 1-d3 only give rise to one type of line shape in the patterns in Fig. 6a. This indicates that the three D atoms of 1-d3 must undergo an identical motional modulation. Based on this requirement, we found that only the in-plane jump motion model in the intermediate regime can be a suitable candidate. Note that the motion model in this manner is somewhat similar to a restricted in-plane rotation along the axial perpendicular to the plane of Im ring. The jump angle (i.e., the reorientation angle), the rate of the jump motion, and the populations in the jump sites have strong influences on the line shape of the spectra (Supplementary Figs. 11?13). It is evident that the simulated patterns match the experimental ones quite well. The simulation reveals that the Im cations likely undergo an in-plane two-site jump motion with a jump angle of 95? (Supplementary Fig. 11). The reorientation rates at different temperatures are fit by the Arrhenius equation, k = k RT), yielding an activation energy of Ea = 52.1 kJ mol?1 0anedxpa(?pErea-/ exponential factor of k0 = 7.44 ? 1012 s?1 (Fig. 6b). The restricted jump of the Im cation is also supported by density functional theory (DFT) calculations of the rotational potential energy profiles of 1-d0 at 293 K (phase II) and 413 K (phase I) (Supplementary Fig. 14). The two jump sites of the motion model may have different energy states in the crystal lattice. This may cause different populations in the sites and thus additional modulation of the line a Fig. 6 Solid-state 2H NMR spectra and analysis. a Simulated (red) and experimental (black) 2H NMR patterns of 1-d3. The experimental temperature varies from 300 to 450 K. The cartoon illustrates the in-plane reorientation motion of the Im cation. A two-site jump motion model is used for the 2H pattern simulation (see the cartoon in a), in which ? is the jump angle, that is, the reorientation angle, and ? is the angle between the ?rotation? axis Cn and the visual plane containing the Im ring. The two orange points are the two jump sites of a specific deuterium atom in the visual plane. In the simulation, a rigid signal component has been added to the simulated patterns. b Arrhenius plot of the reorientation rates, k, were obtained from the simulated 2H NMR spectra via Weblab (http://weblab. The error bars represent an uncertainty of 5% of the jump/reorientation rates from the pattern simulation shape of the pattern. Supplementary Fig. 13 demonstrates the influence of the different populations in the two sites on the line shape of the pattern. Clearly, only the pattern simulated based on equal population in the two sites matches well with the features of the experimental patterns. Thus, in the simulation, we assumed the same energy state of the two sites and in turn equal population of the two sites. In most of the 2H patterns in Fig. 6a, the outer ?Pake wings?, although weak, are observed in both sides of the main signals. This feature indicates the presence of a rigid signal component. To obtain a best fit between the simulated spectra and the experimental ones, we added a rigid signal component in the simulation. One possible origin of this signal component can be attributed to the temperature gradient typically present in NMR probes. In the literature, the 2H patterns of guest molecules trapped in the meso-pores of silica materials48 and polymer matrices49 show complex lineshapes comparable to those in this work. The origin of the complex lineshapes is attributed to a superposition of different 2H signal components from the domains with fast and slow molecular motion. We tried a similar approach but found that the simulated patterns did not fit the experimental ones well (Supplementary Fig. 15). Considering the characteristics of the experimental patterns and diffraction results, we prefer to choose the motion model in the intermediate motional regime for the pattern simulation. However, note that the interpretation of the NMR results is based on the assumption that only a single crystalline phase exists in the system. In principle, the NMR results can also be interpreted by a superposition of the signals from different crystalline phases that have the same X-ray diffraction patterns but different 2H NMR pattern features50. Based on the above X-ray and NMR observations, we cannot completely exclude this possibility. Discussion The H/D isotope effect in 1 is manifested in geometric changes of the H bonds. There are two sets of H bonds in 1: the strong O?H???O (dO???O = 2.47?2.59 ?) bonds between the host TPA anions and the weak N?H???O (dN???O = 2.67?3.00 ?) interactions between the guest Im cation and host TPA anions. We found that the strong H bond of the carboxyl?carboxylate pair is key to the striking GIE. Furthermore, the rigidity of the TPA unit in the host structure is essential to accumulate and transmit the secondary GIE in the H-bonded network. There are two significant consequences of the GIE: isotopic polymorphism and a downward shift of Ttr1, both of which are related with intermolecular interactions. In comparison with the H isomorphs, the downward shift of 33 K of Ttr1 found in the D isomorphs can be accounted for by the internal pressure imposed by the secondary GIE. The small increase of approximately 0.03 ? in dO???O in the host causes a slight structural expansion and weakens the H-bonding interactions between the Im guest and the host (Fig. 5c). The reduced internal pressure on Im exerts a large influence on the dynamics of the confined Im cation, causing the 33 K downward shift of the Ttr1. This phenomenon has been widely found in strain-triggered phase transition materials33, contrary to those H-bonded ferroelectrics14, 18, 19 with upward shift of Ttr. The isotopic polymorphism can be directly understood in terms of the internal pressure. With the elongation of dO???O, the crystal lattice suffers from extra strain energy, which can be counterbalanced by thermal vibrations in phase II but is quickly released in phase III (phase II is only stabilized within a narrow temperature window of 14 K) via the II?III phase transition, resulting in the more stable phase III. This structural transition is witnessed by reorganizations of the supramolecular H-bonding host networks and the guest in the host channel. In addition, the mechanism of the I?II phase transition in 1, which is coupled with the dielectric transition, needs further clarification. In principle, this mechanism can be attributed to structural processes: (i) proton transfer in the O?H???O H bond and/or (ii) reorientation of the Im cation. However, the former can be excluded by the dielectric anisotropy. Specifically, if a proton undergoes an order?disorder transition, an induced dipole moment would appear in the direction of the H-bond chain, which should provide large ?? components along the a and c directions; however, this was not experimentally observed (Supplementary Fig. 3). Meanwhile, the variable-temperature 1H chemical shift of the O?H???O H bond in 1-d0 shows only a slight upfield shift with an increase in temperature, and no sharp changes were observed during the I?II phase transition (Supplementary Fig. 10). This indicates that there is no sharp change in the O?H???O H-bond geometry within the temperature range, which is in good accordance with the temperature-dependent X-ray data. Furthermore, the downward shift of Ttr1 also excludes mechanism (i). In contrast, process (ii) can explain the large dielectric response along the b direction, that is, the reorientation of the Im cation results in a net dipolar contribution to the dielectric response (Supplementary Fig. 16). Therefore, the order?disorder transition between the frozen and motional states of the Im cations, not the proton in the H bond, is responsible for the I?II phase transition and the dielectric switching. Finally, our study has important implications for biomolecular systems and crystal engineering. Strong H bonds are commonly found in proteins51, such as the O?H???O bonds among the electrically charged carboxyl/carboxylate (e.g., aspartic acid and glutamic acid) residues and/or water in proteins52, 53. Upon deuteration, the GIE can change these H bonds and at least alter the local configurational/conformational structures that are directly/indirectly associated with physical/chemical/biological properties and functions, such as substrate binding, enzyme catalysis, protein folding and stabilization, and phase transitions and related properties. These potential effects of deuteration set a strict limit on the use of deuterated samples as proxies in structural studies of biological systems. For example, due to the low resolution of H bonds in macromolecular structures and the rarity of isotopic polymorphism, the potential significance of the GIE has been largely underestimated in neutron protein crystallography4, 54, 55. As a powerful tool for directly locating H/ D atom positions in protein structures, this method is based on the widely accepted assumption that macromolecular crystal structures are in general not affected by deuteration. However, that is not always the case, as shown in this study. More importantly, our findings support the notion that the GIE can be used as a powerful tool for applications, such as probing and tuning H-bonded structures and related properties, understanding the nature of H bonds, improving calculations for crystal structure predictions, and designing and synthesizing new materials. In conclusion, our study reveals a striking GIE in a hydrogenbonded host?guest crystal. The increase in the donor?acceptor distance in the strong O?H???O hydrogen bonds in the host structure upon deuteration is responsible for the changes in the global hydrogen-bonded supramolecular structure and guest dynamics, resulting in isotopic polymorphism and a modified dielectric transition property. These findings deepen our understanding of the GIE in hydrogen bonds and suggest an approach to tune the phase-transition-related physical properties of hydrogen-bonded systems. Importantly, this work shows that a cautious consideration of the GIE must be given in related studies, such as structural identifications in biological systems. Methods Sample preparation. All reagents in analytical grade were used without further purification. Imidazole-d4 (98 atom % D) and D2O (99.8 atom % D) were purchased from Sigma?Aldrich. Terephthalic acid (1.66 g, 10 mmol) and imidazole (1.36 g, 20 mmol) were dissolved in a mixed solution of DMSO (5 mL) and distilled water (10 mL). Evaporation of the solution at room temperature in air afforded block-like colorless crystals of 1-d0. Yield 65% (based on terephthalic acid). Anal. Calcd (%) for C11H10N2O4 (Mr = 234.21): C, 56.41; H, 4.30; N, 11.96. Found: C, 55.80; H, 4.32; N, 12.10. Selected FT-IR peaks (KBr, cm?1): 3131 s, 1716 s. For the deuterated samples, the H/D exchanges were repeated five times via a dissolutiondrying process. Because there is a phase separation in the H and D isomorphs at room temperature, the deuteration percentages of the deuterated samples are theoretically independent of the purities of the deuterated reagents and the H/D exchange times. For all measurements, large single crystals (around 500 mg) were used that were well characterized by X-ray diffractions. X-ray diffraction experiments. The single-crystal X-ray diffraction data for 1-d0, 1-d2, 1-d3, and 1-d5 were collected at varied temperature on a Rigaku Saturn 724+ CCD diffractometer using Mo K? radiation (? = 0.71075 ?) from a graphite monochromator. The structures were solved by direct methods and refined by the full-matrix method based on F2 using the SHELX-97 program package56. The H atom in the O?H???O bond was located from the difference Fourier synthesis and isotropically refined without any restraints. It was visualized by using Platon57. Other H atoms were generated geometrically and refined using a riding model with Uiso = 1.2Ueq (C and N). The D atoms were refined as H atoms. The crystallographic data and selected hydrogen bonds are listed in Supplementary Tables 1 and 2. Thermal spectra. TGA measurements were carried out on a TA Instruments Q500 thermogravimetric analyzer. DSC measurements were performed on a NETZSCH DSC 200F3 instrument under nitrogen at atmospheric pressure in an aluminum crucible with a heating/cooling rate of 10 K min?1. Elemental analysis. Elemental analyses of C, H, and N content were performed on a Vario MICRO analyzer. Dielectric spectra. Measurements of the temperature-dependent dielectric constant were carried out on single-crystal or crystalline-powdered samples in a Ag| sample|Ag sandwich arrangement by using a Tonghui TH2828A impedance analyzer at frequencies of 1?1000 kHz with an applied electric field of 1 V. Solid-state NMR spectra. The wide-line 2H NMR measurements were performed on a Bruker Avance III 300 spectrometer operating at 46.07 MHz for 2H. A Bruker two-channel static PE probe with a homemade 2.5 mm coil was used to record the 2H spectra. The spectra were acquired using the solid echo sequence (90??? ? 90??? ?acquisition). The 2H pulse width was 2 ?s at an RF field strength of ?B1/2? = 125 kHz. The refocusing delay ? was approximately 28 ?s. Theoretical calculations. DFT calculations were performed using the Vienna ab initio simulation package58. The projector augmented wave method was used to describe the interactions between ions and electrons59, 60. The exchange?correlation interaction functional was the generalized gradient approximation in the Perdew?Burke?Ernzerhof functional61. The van der Waals interactions were included by using Grimme?s dispersion-corrected semi-empirical DFT-D2 method62. The cutoff energy for the plane wave basis set was set to 400 eV. The integration over the irreducible Brillouin zone was carried out over a 7 ? 3 ? 5 Monkhorst?Pack grid63. A single ?-point calculation was sufficient for sampling the Brillouin zone. The potential-energy curve for the rotation of the Im cation in 1-d0 was plotted by calculating single-point energies every 10? through a 360? rotation. The rotational axis was defined to be perpendicular to the Im ion plane and across the center of the five-membered ring. Data availability. The X-ray crystallographic data reported in this article were deposited at the Cambridge Crystallographic Data Centre (CCDC), under deposition numbers CCDC 1493602?1493622. These data can be obtained free of charge from The Cambridge Crystallographic Data Centre via uk/data_request/cif. All other data that support the findings of this study are available from the corresponding author on request. Author contributions W.Z. conceived the project and designed the experiments. C.S. and C.-H.Y. performed synthesis and characterization experiments. X.Z. and Y.-F.Y. measured the solid-state NMR spectra. W.Z. and Y.-F.Y. analyzed the data and wrote the manuscript. All authors discussed the results and commented on the manuscript. Additional information Supplementary Information accompanies this paper at Competing interests: The authors declare no competing financial interests. Reprints and permission information is available online at reprintsandpermissions/ Publisher's note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article?s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article?s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit licenses/by/4.0/. This work was financially supported by National Natural Science Foundation of China (21225102 and 21574043 ), National Key Basic Research Program of China (973 Program) ( 2013CB921801 ), and National High-Tech R & D Program of China (863 Program) (2014AA123400 and 2014AA123401) . We thank the staffs from BL17B beamline of National Facility for Protein Science in Shanghai (NFPS) at Shanghai Synchrotron Radiation Facility, for assistance during data collection .

This is a preview of a remote PDF:

Chao Shi, Xi Zhang, Chun-Hua Yu, Ye-Feng Yao, Wen Zhang. Geometric isotope effect of deuteration in a hydrogen-bonded host–guest crystal, Nature Communications, 2018, DOI: 10.1038/s41467-018-02931-8