Nature Chemistry

List of Papers (Total 517)

A framework for evaluating the chemical knowledge and reasoning abilities of large language models against the expertise of chemists

Large language models (LLMs) have gained widespread interest owing to their ability to process human language and perform tasks on which they have not been explicitly trained. However, we possess only a limited systematic understanding of the chemical capabilities of LLMs, which would be required to improve models and mitigate potential harm. Here we introduce ChemBench, an...

Efficient and selective energy transfer photoenzymes powered by visible light

The development of [2 + 2] cyclases containing benzophenone triplet sensitizers highlights the potential of engineered enzymes as a platform for stereocontrolled energy transfer photocatalysis. However, the suboptimal photophysical features of benzophenone necessitates the use of ultraviolet light, limits photochemical efficiency and restricts the range of chemistries accessible...

Synthesis of zwitterionic open-shell bilayer spironanographenes

Molecular nanographenes (NGs) are nanoscale graphene fragments obtained by organic synthetic protocols. Here we report the bottom-up synthesis of two spiro-NGs formed by two substituted hexa-peri-hexabenzocoronenes (HBCs), spiro-NG and F-spiro-NG. The X-ray crystal structure of the deca-tert-butyl-functionalized spiro-NG shows a bilayer disposition of the HBCs in face-to-face...

Valence-delocalized trithorium nanocluster superatoms with open-shell exalted diamagnetism

Quantum-confined nanoclusters can be described by the jellium model, which emphasizes closed-shell electron configurations, but an open-shell variation with jellium aromaticity has been proposed. Such clusters are termed superatoms because they behave like an atom, and they exhibit unusual properties. Superatoms feature metal–metal bonding; hence, since their discovery 40 years...

Non-enzymatic methylcyclization of alkenes

Methyltransferases are a broad class of enzymes that catalyse the transfer of methyl groups onto a wide variety of substrates and functionalities. In their most striking variant, bifunctional methyltransferase–cyclases both transfer a methyl group onto alkenes and induce cyclization (methylcyclization). Although recent years have seen substantial advances in the methylation of...

Photoinduced stepwise charge hopping in π-stacked perylene bisimide donor–bridge–acceptor arrays

The mechanistic understanding of light-driven charge separation and charge-carrier transport within the frameworks of π-conjugated molecules is imperative to mimic natural photosynthesis and derive synthetic materials for solar energy conversion. In this regard, since the late 1980s, the distance and solvent dependence of stepwise (incoherent) charge-carrier hopping versus single...

High-pressure pump–probe experiments reveal the mechanism of excited-state proton-coupled electron transfer and a shift from stepwise to concerted pathways

Chemical energy conversion and storage in natural and artificial systems rely on proton-coupled electron transfer (PCET) processes. Concerted proton-electron transfer (CPET) can provide kinetic advantages over stepwise processes (electron transfer (ET)/proton transfer (PT) or PT/ET), so understanding how to distinguish and modulate these processes is important for their...

Oxidation of interfacial cobalt controls the pH dependence of the oxygen evolution reaction

Transition metal oxides often undergo dynamic surface reconstruction under oxygen evolution reaction conditions to form the active state, which differs in response to the electrolyte pH. The resulting pH dependency of catalytic activity is commonly observed but poorly understood. Herein we track Co oxidation state changes at different pH-directed (hydr)oxide/electrolyte...

Optical control of gene expression using a DNA G-quadruplex targeting reversible photoswitch

Transcriptional regulation is a dynamic process that coordinates diverse cellular activities, and the use of small molecules to perturb gene expression has propelled our understanding of the fundamental regulatory mechanisms. However, small molecules typically lack the spatiotemporal precision required in highly non-invasive, controlled settings. Here we present the development...

Biomimetic 1,2-amino migration via photoredox catalysis

Synthetic organic chemists continually draw inspiration from biocatalytic processes to innovate synthetic methodologies beyond existing catalytic platforms. Within this context, although 1,2-amino migration represents a viable biochemical process, it remains underutilized within the synthetic organic chemistry community. Here we present a biomimetic 1,2-amino migration...

Amphoteric chalcogen-bonding and halogen-bonding rotaxanes for anion or cation recognition

The ever-increasing demand in the development of host molecules for the recognition of charged species is stimulated by their fundamental roles in numerous biological and environmental processes. Here, capitalizing on the inherent amphoteric nature of anisotropically polarized tellurium or iodine atoms, we demonstrate a proof of concept in charged guest recognition, where the...

Site-specific activation of the proton pump inhibitor rabeprazole by tetrathiolate zinc centres

Proton pump inhibitors have become top-selling drugs worldwide. Serendipitously discovered as prodrugs that are activated by protonation in acidic environments, proton pump inhibitors inhibit stomach acid secretion by covalently modifying the gastric proton pump. Despite their widespread use, alternative activation mechanisms and potential target proteins in non-acidic...

A glycan foldamer that uses carbohydrate–aromatic interactions to perform catalysis

In nature, the ability to catalyse reactions is primarily associated with proteins and ribozymes. Inspired by these systems, peptide-based catalysts have been designed to accelerate chemical reactions and/or ensure regio- and stereoselective transformations. We wondered whether other biomolecules (such as glycans) could be designed to perform catalytic functions, expanding the...

Interface flexibility controls the nucleation and growth of supramolecular networks

Supramolecular networks are abundantly present in nature and, like crystalline materials, often develop from an initial nucleation site, followed by growth based on directional interactions between components. Traditionally, the binding strength and directionality of interactions is thought to dictate nucleation and crystal growth, whereas structural flexibility favours defects...

Redox-active inverse crowns for small molecule activation

Cyclic crown ethers bind metal cations to form host–guest complexes. Lesser-known inverse crowns are rings of metal cations that encapsulate anionic entities, enabling multiple deprotonation reactions, often with unusual selectivity. Self-assembly of a cycle of metal cations around the multiply charged carbanion during the deprotonation reaction is the driving force for this...

A living library concept to capture the dynamics and reactivity of mixed-metal clusters for catalysis

The exploration of ligated metal clusters’ chemical space is challenging, partly owing to an insufficiently targeted access to reactive clusters. Now, dynamic mixtures of clusters, defined as living libraries, are obtained through organometallic precursor chemistry. The libraries are populated with interrelated clusters, including transient and highly reactive ones, as well as...

Computational design of highly signalling-active membrane receptors through solvent-mediated allosteric networks

Protein catalysis and allostery require the atomic-level orchestration and motion of residues and ligand, solvent and protein effector molecules. However, the ability to design protein activity through precise protein–solvent cooperative interactions has not yet been demonstrated. Here we report the design of 14 membrane receptors that catalyse G protein nucleotide exchange...