Addendum: Standardizing global gene expression analysis between laboratories and across platforms

Nature Methods, Jun 2005

Theodore Bammler, Richard P Beyer, Sanchita Bhattacharya, Gary A Boorman, Abee Boyles, Blair U Bradford, Roger E Bumgarner, et al.

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Addendum: Standardizing global gene expression analysis between laboratories and across platforms

ADDENDA AND CORRIGENDA Addendum: Standardizing global gene expression analysis between laboratories and across platforms © 2005 Nature Publishing Group http://www.nature.com/naturemethods Members of the Toxicogenomics Research Consortium Nat. Methods 2, 351–356 (2005). The authors were listed as Members of The Toxicogenomics Research Consortium, with a complete list of authors available in a Supplementary Note online. A complete list of authors in alphabetical order and their affiliations follows. Theodore Bammler1, Richard P Beyer1, Sanchita Bhattacharya2, Gary A Boorman3, Abee Boyles4, Blair U Bradford5, Roger E Bumgarner6, Pierre R Bushel7, Kabir Chaturvedi8, Dongseok Choi9, Michael L Cunningham3, Shibing Deng5, Holly K Dressman4, Rickie D Fannin7, Fredrico M Farin1, Jonathan H Freedman4, Rebecca C Fry2, Angel Harper8, Michael C Humble10, Patrick Hurban8, Terrance J Kavanagh1, William K Kaufmann5, Kathleen F Kerr11, Li Jing12, Jodi A Lapidus9, Michael R Lasarev13, Jianying Li7, Yi-Ju Li4, Edward K Lobenhofer8, Xinfang Lu14, Renae L Malek15, Sean Milton2, Srinivasa R Nagalla14, Jean P O’Malley14, Valerie S Palmer13, Patrick Pattee14, Richard S Paules7, Charles M Perou5, Ken Phillips8, Li-Xuan Qin11, Yang Qiu8, Sean D Quigley1, Matthew Rodland14, Ivan Rusyn5, Leona D Samson2, David A Schwartz4, Yan Shi5, Jung-Lim Shin12, Stella O Sieber7, Susan Slifer4, Marcy C Speer4, Peter S Spencer13, Dean I Sproles13, James A Swenberg5, William A Suk10, Robert C Sullivan12, Ru Tian5, Raymond W Tennant7, Signe A Todd14, Charles J Tucker7, Bennett Van Houten10, Brenda K Weis10, Shirley Xuan2 & Helmut Zarbl12 1Department of Environmental and Occupational Health Sciences and the Center for Ecogenetics and Environmental Health, University of Washington, Box 357234, Seattle, Washington 98195-7234, USA. 2Biological Engineering Division, Center for Environmental Health Sciences, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 56-235 Cambridge, Massachusetts 02139, USA. 3National Toxicology Program, National Institute of Environmental Health Sciences, 111 TW Alexander Drive, Research Triangle Park, North Carolina 27709, USA. 4Duke University Medical Center, Department of Medicine, DUMC 2629, Room 275 MSRB, Research Drive, Durham, North Carolina 27710, USA. 5Lineberger Comprehensive Cancer Center, University of North Carolina, CB#7295, Chapel Hill, North Carolina 27599, USA. 6Department of Microbiology, Box 358070, University of Washington, Seattle, Washington 98195, USA. 7National Center for Toxicogenomics, National Institute of Environmental Health Sciences, 111 TW Alexander Drive, Research Triangle Park, North Carolina 27709, USA. 8Icoria, Inc., 108 TW Alexander Drive, Building 1A, Research Triangle Park, North Carolina 27709, USA. 9Division of Biostatistics, School of Public Health and Preventive Medicine, School of Medicine, Oregon Health & Science University, Portland, Oregon 97239, USA. 10Division of Extramural Research and Training, National Institute for Environmental Health Sciences, 111 TW Alexander Drive, Research Triangle Park, North Carolina 27709, USA. 11Department of Biostatistics, University of Washington, Box 357234, Seattle, Washington 98195-7234 USA. 12Fred Hutchinson Cancer Research Center, 1100 Fairview Ave North, Mailstop C1-1015, Seattle, Washington 98109, USA. 13Center for Research on Occupational and Environmental Toxicology, Oregon Health & Science University, Portland, Oregon 97239, USA. 14Center for Biomarker Discovery, Department of Pediatrics, Oregon Health & Science University, Portland, Oregon 97239, USA. 15The Institute for Genomic Research, Rockville, Maryland, USA. Corrigendum: Multiple-laboratory comparison of microarray platforms Rafael A Irizarry, Daniel Warren, Forrest Spencer, Irene F Kim, Shyam Biswal, Bryan C Frank, Edward Gabrielson, Joe G N Garcia, Joel Geoghegan, Gregory Germino, Constance Griffin, Sara C Hilmer, Eric Hoffman, Anne E Jedlicka, Ernest Kawasaki, Francisco MartínezMurillo, Laura Morsberger, Hannah Lee, David Petersen, John Quackenbush, Alan Scott, Michael Wilson, Yanqin Yang, Shui Qing Ye & Wayne Yu Nat. Methods 2, 345–349 (2005). The GEO accession number for the array data is GSE2521. NATURE METHODS | VOL.2 NO.6 | JUNE 2005 | 477 (...truncated)


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Theodore Bammler, Richard P Beyer, Sanchita Bhattacharya, Gary A Boorman, Abee Boyles, Blair U Bradford, Roger E Bumgarner, Pierre R Bushel, Kabir Chaturvedi, Dongseok Choi, Michael L Cunningham, Shibing Deng, Holly K Dressman, Rickie D Fannin, Fredrico M Farin, Jonathan H Freedman, Rebecca C Fry, Angel Harper, Michael C Humble, Patrick Hurban, Terrance J Kavanagh, William K Kaufmann, Kathleen F Kerr, Li Jing, Jodi A Lapidus, Michael R Lasarev, Jianying Li, Yi-Ju Li, Edward K Lobenhofer, Xinfang Lu, Renae L Malek, Sean Milton, Srinivasa R Nagalla, Jean P O'Malley, Valerie S Palmer, Patrick Pattee, Richard S Paules, Charles M Perou, Ken Phillips, Li-Xuan Qin, Yang Qiu, Sean D Quigley, Matthew Rodland, Ivan Rusyn, Leona D Samson, David A Schwartz, Yan Shi, Jung-Lim Shin, Stella O Sieber, Susan Slifer, Marcy C Speer, Peter S Spencer, Dean I Sproles, James A Swenberg, William A Suk, Robert C Sullivan, Ru Tian, Raymond W Tennant, Signe A Todd, Charles J Tucker, Bennett Van Houten, Brenda K Weis, Shirley Xuan, Helmut Zarbl. Addendum: Standardizing global gene expression analysis between laboratories and across platforms, Nature Methods, 2005, Issue: 2, DOI: 10.1038/nmeth0605-477a