Biological Cybernetics

Biological Cybernetics is an interdisciplinary medium for theoretical and application-oriented investigations of information processing and control in ...

List of Papers (Total 255)

Generalised free energy and active inference

Active inference is an approach to understanding behaviour that rests upon the idea that the brain uses an internal generative model to predict incoming sensory data. The fit between this model and data may be improved in two ways. The brain could optimise probabilistic beliefs about the variables in the generative model (i.e. perceptual inference). Alternatively, by acting on...

A generic deviance detection principle for cortical On/Off responses, omission response, and mismatch negativity

Neural responses to sudden changes can be observed in many parts of the sensory pathways at different organizational levels. For example, deviants that violate regularity at various levels of abstraction can be observed as simple On/Off responses of individual neurons or as cumulative responses of neural populations. The cortical deviance-related responses supporting different...

A theory of consciousness: computation, algorithm, and neurobiological realization

The most enigmatic aspect of consciousness is the fact that it is felt, as a subjective sensation. The theory proposed here aims to explain this particular aspect. The theory encompasses both the computation that is presumably involved and the way in which that computation may be realized in the brain’s neurobiology. It is assumed that the brain makes an internal estimate of an...

Information processing in the LGN: a comparison of neural codes and cell types

To understand how anatomy and physiology allow an organism to perform its function, it is important to know how information that is transmitted by spikes in the brain is received and encoded. A natural question is whether the spike rate alone encodes the information about a stimulus (rate code), or additional information is contained in the temporal pattern of the spikes...

An unsupervised neuromorphic clustering algorithm

Brains perform complex tasks using a fraction of the power that would be required to do the same on a conventional computer. New neuromorphic hardware systems are now becoming widely available that are intended to emulate the more power efficient, highly parallel operation of brains. However, to use these systems in applications, we need “neuromorphic algorithms” that can run on...

Explaining event-related fields by a mechanistic model encapsulating the anatomical structure of auditory cortex

Event-related fields of the magnetoencephalogram are triggered by sensory stimuli and appear as a series of waves extending hundreds of milliseconds after stimulus onset. They reflect the processing of the stimulus in cortex and have a highly subject-specific morphology. However, we still have an incomplete picture of how event-related fields are generated, what the various waves...

A process account of the uncontrolled manifold structure of joint space variance in pointing movements

In many situations, the human movement system has more degrees of freedom than needed to achieve a given movement task. Martin et al. (Neural Comput 21(5):1371–1414, 2009) accounted for signatures of such redundancy like self-motion and motor equivalence in a process model in which a neural oscillator generated timed end-effector virtual trajectories that a neural dynamics...

Emergence of cognitive priming and structure building from the hierarchical interaction of canonical microcircuit models

The concept of connectionism states that higher cognitive functions emerge from the interaction of many simple elements. Accordingly, research on canonical microcircuits conceptualizes findings on fundamental neuroanatomical circuits as well as recurrent organizational principles of the cerebral cortex and examines the link between architectures and their associated functionality...

Control theory in biology and medicine

From September–December 2017, the Mathematical Biosciences Institute at Ohio State University hosted a series of workshops on control theory in biology and medicine, including workshops on control and modulation of neuronal and motor systems, control of cellular and molecular systems, control of disease / personalized medicine across heterogeneous populations, and sensorimotor...

Human-like hopping in machines

Template models of legged locomotion are powerful tools for gait analysis, but can also inspire robot design and control. In this paper, a spring-loaded inverted pendulum (SLIP) model is employed to control vertical hopping of a 2-segmented legged robot. Feed-forward and bio-inspired virtual model control using the SLIP model are compared. In the latter approach, the feedback...

Weak-noise-induced transitions with inhibition and modulation of neural oscillations

We analyze the effect of weak-noise-induced transitions on the dynamics of the FitzHugh–Nagumo neuron model in a bistable state consisting of a stable fixed point and a stable unforced limit cycle. Bifurcation and slow-fast analysis give conditions on the parameter space for the establishment of this bi-stability. In the parametric zone of bi-stability, weak-noise amplitudes may...

Combined mechanisms of neural firing rate homeostasis

Spikes in the membrane potential of neurons comprise the currency of information processing in the brain. The ability of neurons to convert any information present across their multiple inputs into a significant modification to the pattern of their emitted spikes depends on the rate at which they emit spikes. If the mean rate is near the neuron’s maximum, or if the rate is near...

Methods for identification of spike patterns in massively parallel spike trains

Temporally, precise correlations between simultaneously recorded neurons have been interpreted as signatures of cell assemblies, i.e., groups of neurons that form processing units. Evidence for this hypothesis was found on the level of pairwise correlations in simultaneous recordings of few neurons. Increasing the number of simultaneously recorded neurons increases the chances to...

Planning and navigation as active inference

This paper introduces an active inference formulation of planning and navigation. It illustrates how the exploitation–exploration dilemma is dissolved by acting to minimise uncertainty (i.e. expected surprise or free energy). We use simulations of a maze problem to illustrate how agents can solve quite complicated problems using context sensitive prior preferences to form...

Sustained sensorimotor control as intermittent decisions about prediction errors: computational framework and application to ground vehicle steering

A conceptual and computational framework is proposed for modelling of human sensorimotor control and is exemplified for the sensorimotor task of steering a car. The framework emphasises control intermittency and extends on existing models by suggesting that the nervous system implements intermittent control using a combination of (1) motor primitives, (2) prediction of sensory...

Bipedal robotic walking control derived from analysis of human locomotion

This paper proposes the design of a bipedal robotic controller where the function between the sensory input and motor output is treated as a black box derived from human data. In order to achieve this, we investigated the causal relationship between ground contact information from the feet and leg muscle activity n human walking and calculated filter functions which transform...

Ergodicity and parameter estimates in auditory neural circuits

This paper discusses ergodic properties and circular statistical characteristics in neuronal spike trains. Ergodicity means that the average taken over a long time period and over smaller population should equal the average in less time and larger population. The objectives are to show simple examples of design and validation of a neuronal model, where the ergodicity assumption...

Winnerless competition in clustered balanced networks: inhibitory assemblies do the trick

Balanced networks are a frequently employed basic model for neuronal networks in the mammalian neocortex. Large numbers of excitatory and inhibitory neurons are recurrently connected so that the numerous positive and negative inputs that each neuron receives cancel out on average. Neuronal firing is therefore driven by fluctuations in the input and resembles the irregular and...

A multi-joint model of quiet, upright stance accounts for the “uncontrolled manifold” structure of joint variance

The upright body in quiet stance is usually modeled as a single-link inverted pendulum. This agrees with most of the relevant sensory organs being at the far end of the pendulum, i.e., the eyes and the vestibular system in the head. Movement of the body in quiet stance has often been explained in terms of the “ankle strategy,” where most movement is generated by the ankle...

Affective–associative two-process theory: a neurocomputational account of partial reinforcement extinction effects

The partial reinforcement extinction effect (PREE) is an experimentally established phenomenon: behavioural response to a given stimulus is more persistent when previously inconsistently rewarded than when consistently rewarded. This phenomenon is, however, controversial in animal/human learning theory. Contradictory findings exist regarding when the PREE occurs. One body of...