Biological Cybernetics

Biological Cybernetics is an interdisciplinary medium for theoretical and application-oriented investigations of information processing and control in ...

List of Papers (Total 255)

Synapse fits neuron: joint reduction by model inversion

In this paper, we introduce a novel simplification method for dealing with physical systems that can be thought to consist of two subsystems connected in series, such as a neuron and a synapse. The aim of our method is to help find a simple, yet convincing model of the full cascade-connected system, assuming that a satisfactory model of one of the subsystems, e.g., the neuron, is...

Morphology and the gradient of a symmetric potential predict gait transitions of dogs

Gaits and gait transitions play a central role in the movement of animals. Symmetry is thought to govern the structure of the nervous system, and constrain the limb motions of quadrupeds. We quantify the symmetry of dog gaits with respect to combinations of bilateral, fore–aft, and spatio-temporal symmetry groups. We tested the ability of symmetries to model motion capture data...

A spiking neural network model of the midbrain superior colliculus that generates saccadic motor commands

Single-unit recordings suggest that the midbrain superior colliculus (SC) acts as an optimal controller for saccadic gaze shifts. The SC is proposed to be the site within the visuomotor system where the nonlinear spatial-to-temporal transformation is carried out: the population encodes the intended saccade vector by its location in the motor map (spatial), and its trajectory and...

Retrieving challenging vessel connections in retinal images by line co-occurrence statistics

Natural images contain often curvilinear structures, which might be disconnected, or partly occluded. Recovering the missing connection of disconnected structures is an open issue and needs appropriate geometric reasoning. We propose to find line co-occurrence statistics from the centerlines of blood vessels in retinal images and show its remarkable similarity to a well-known...

Simultaneous spatio-temporal matching pursuit decomposition of evoked brain responses in MEG

We present a novel approach to the spatio-temporal decomposition of evoked brain responses in magnetoencephalography (MEG) aiming at a sparse representation of the underlying brain activity in terms of spatio-temporal atoms. Our approach is characterized by three attributes which constitute significant improvements with respect to existing approaches: (1) the spatial and temporal...

Robustness, flexibility, and sensitivity in a multifunctional motor control model

Motor systems must adapt to perturbations and changing conditions both within and outside the body. We refer to the ability of a system to maintain performance despite perturbations as “robustness,” and the ability of a system to deploy alternative strategies that improve fitness as “flexibility.” Different classes of pattern-generating circuits yield dynamics with differential...

Animals and ICE: meaning, origin, and diversity

ICE stands for internally coupled ears. More than half of the terrestrial vertebrates, such as frogs, lizards, and birds, as well as many insects, are equipped with ICE that utilize an air-filled cavity connecting the two eardrums. Its effect is pronounced and twofold. On the basis of a solid experimental and mathematical foundation, it is known that there is a low-frequency...

Beyond in-phase and anti-phase coordination in a model of joint action

In 1985, Haken, Kelso and Bunz proposed a system of coupled nonlinear oscillators as a model of rhythmic movement patterns in human bimanual coordination. Since then, the Haken–Kelso–Bunz (HKB) model has become a modelling paradigm applied extensively in all areas of movement science, including interpersonal motor coordination. However, all previous studies have followed a line...

Entrainment and synchronization in networks of Rayleigh–van der Pol oscillators with diffusive and Haken–Kelso–Bunz couplings

We analyze a network of non-identical Rayleigh–van der Pol (RvdP) oscillators interconnected through either diffusive or nonlinear coupling functions. The work presented here extends existing results on the case of two nonlinearly coupled RvdP oscillators to the problem of considering a network of three or more of them. Specifically, we study synchronization and entrainment in...

A review of human sensory dynamics for application to models of driver steering and speed control

In comparison with the high level of knowledge about vehicle dynamics which exists nowadays, the role of the driver in the driver–vehicle system is still relatively poorly understood. A large variety of driver models exist for various applications; however, few of them take account of the driver’s sensory dynamics, and those that do are limited in their scope and accuracy. A...

Bio-inspired feedback-circuit implementation of discrete, free energy optimizing, winner-take-all computations

Bayesian inference and bounded rational decision-making require the accumulation of evidence or utility, respectively, to transform a prior belief or strategy into a posterior probability distribution over hypotheses or actions. Crucially, this process cannot be simply realized by independent integrators, since the different hypotheses and actions also compete with each other. In...

Response functions for electrically coupled neuronal network: a method of local point matching and its applications

Neuronal networks connected by electrical synapses, also referred to as gap junctions, are present throughout the entire central nervous system. Many instances of gap-junctional coupling are formed between dendritic arbours of individual cells, and these dendro-dendritic gap junctions are known to play an important role in mediating various brain rhythms in both normal and...

Internally coupled ears in living mammals

It is generally held that the right and left middle ears of mammals are acoustically isolated from each other, such that mammals must rely on neural computation to derive sound localisation cues. There are, however, some unusual species in which the middle ear cavities intercommunicate, in which case each ear might be able to act as a pressure-difference receiver. This could...

Learning to grasp and extract affordances: the Integrated Learning of Grasps and Affordances (ILGA) model

The activity of certain parietal neurons has been interpreted as encoding affordances (directly perceivable opportunities) for grasping. Separate computational models have been developed for infant grasp learning and affordance learning, but no single model has yet combined these processes in a neurobiologically plausible way. We present the Integrated Learning of Grasps and...

Selection of cortical dynamics for motor behaviour by the basal ganglia

The basal ganglia and cortex are strongly implicated in the control of motor preparation and execution. Re-entrant loops between these two brain areas are thought to determine the selection of motor repertoires for instrumental action. The nature of neural encoding and processing in the motor cortex as well as the way in which selection by the basal ganglia acts on them is...

Cerebellum-inspired neural network solution of the inverse kinematics problem

The demand today for more complex robots that have manipulators with higher degrees of freedom is increasing because of technological advances. Obtaining the precise movement for a desired trajectory or a sequence of arm and positions requires the computation of the inverse kinematic (IK) function, which is a major problem in robotics. The solution of the IK problem leads robots...

Invariant visual object recognition: biologically plausible approaches

Key properties of inferior temporal cortex neurons are described, and then, the biological plausibility of two leading approaches to invariant visual object recognition in the ventral visual system is assessed to investigate whether they account for these properties. Experiment 1 shows that VisNet performs object classification with random exemplars comparably to HMAX, except...

Computational modeling of Adelta-fiber-mediated nociceptive detection of electrocutaneous stimulation

Sensitization is an example of malfunctioning of the nociceptive pathway in either the peripheral or central nervous system. Using quantitative sensory testing, one can only infer sensitization, but not determine the defective subsystem. The states of the subsystems may be characterized using computational modeling together with experimental data. Here, we develop a...

Developmental time windows for axon growth influence neuronal network topology

Early brain connectivity development consists of multiple stages: birth of neurons, their migration and the subsequent growth of axons and dendrites. Each stage occurs within a certain period of time depending on types of neurons and cortical layers. Forming synapses between neurons either by growing axons starting at similar times for all neurons (much-overlapped time windows...

STDP in lateral connections creates category-based perceptual cycles for invariance learning with multiple stimuli

Learning to recognise objects and faces is an important and challenging problem tackled by the primate ventral visual system. One major difficulty lies in recognising an object despite profound differences in the retinal images it projects, due to changes in view, scale, position and other identity-preserving transformations. Several models of the ventral visual system have been...

Sparse sampling: theory, methods and an application in neuroscience

The current methods used to convert analogue signals into discrete-time sequences have been deeply influenced by the classical Shannon–Whittaker–Kotelnikov sampling theorem. This approach restricts the class of signals that can be sampled and perfectly reconstructed to bandlimited signals. During the last few years, a new framework has emerged that overcomes these limitations and...