Biological Cybernetics

Biological Cybernetics is an interdisciplinary medium for theoretical and application-oriented investigations of information processing and control in ...

List of Papers (Total 255)

Optimal control for stochastic neural oscillators

This study develops an event-based, energy-efficient control strategy for desynchronizing coupled neuronal networks using optimal control theory. Inspired by phase resetting techniques in Parkinson’s disease treatment, we incorporate stochasticity of the system’s dynamics into deterministic models to address neural system intrinsic noise. We use an advanced computational solver...

Counteracting uncertainty: exploring the impact of anxiety on updating predictions about environmental states

Anxious emotional states disrupt decision-making and control of dexterous motor actions. Computational work has shown that anxiety-induced uncertainty alters the rate at which we learn about the environment, but the subsequent impact on the predictive beliefs that drive action control remains to be understood. In the present work we tested whether anxiety alters predictive (oculo...

Antifragile control systems in neuronal processing: a sensorimotor perspective

The stability–robustness–resilience–adaptiveness continuum in neuronal processing follows a hierarchical structure that explains interactions and information processing among the different time scales. Interestingly, using “canonical” neuronal computational circuits, such as Homeostatic Activity Regulation, Winner-Take-All, and Hebbian Temporal Correlation Learning, one can...

The role of the prefrontal cortex in cocaine-induced noradrenaline release in the nucleus accumbens: a computational study

Research has extensively explored the role of the dopaminergic system in the reward circuit, while the contribution of the noradrenergic system remains less understood. This study aims to fill this gap by employing computational modeling to examine how the medial prefrontal cortex (mPFC) influences cocaine-induced norepinephrine (NE) release in the nucleus accumbens shell (NAcc...

Action of the Euclidean versus projective group on an agent’s internal space in curiosity driven exploration

According to the Projective Consciousness Model (PCM), in human spatial awareness, 3-dimensional projective geometry structures information integration and action planning through perspective taking within an internal representation space. The way different perspectives are related to and transform a world model defines a specific perception and imagination scheme. In mathematics...

Extraction of parameters of a stochastic integrate-and-fire model with adaptation from voltage recordings

Integrate-and-fire models are an important class of phenomenological neuronal models that are frequently used in computational studies of single neural activity, population activity, and recurrent neural networks. If these models are used to understand and interpret electrophysiological data, it is important to reliably estimate the values of the model’s parameters. However...

Can a Hebbian-like learning rule be avoiding the curse of dimensionality in sparse distributed data?

It is generally assumed that the brain uses something akin to sparse distributed representations. These representations, however, are high-dimensional and consequently they affect classification performance of traditional Machine Learning models due to the “curse of dimensionality”. In tasks for which there is a vast amount of labeled data, Deep Networks seem to solve this issue...

Variational analysis of sensory feedback mechanisms in powerstroke–recovery systems

Although the raison d’etre of the brain is the survival of the body, there are relatively few theoretical studies of closed-loop rhythmic motor control systems. In this paper we provide a unified framework, based on variational analysis, for investigating the dual goals of performance and robustness in powerstroke–recovery systems. To demonstrate our variational method, we...

How the brain can be trained to achieve an intermittent control strategy for stabilizing quiet stance by means of reinforcement learning

The stabilization of human quiet stance is achieved by a combination of the intrinsic elastic properties of ankle muscles and an active closed-loop activation of the ankle muscles, driven by the delayed feedback of the ongoing sway angle and the corresponding angular velocity in a way of a delayed proportional (P) and derivative (D) feedback controller. It has been shown that the...

Full Hill-type muscle model of the I1/I3 retractor muscle complex in Aplysia californica

The coordination of complex behavior requires knowledge of both neural dynamics and the mechanics of the periphery. The feeding system of Aplysia californica is an excellent model for investigating questions in soft body systems’ neuromechanics because of its experimental tractability. Prior work has attempted to elucidate the mechanical properties of the periphery by using a...

COVID-19 and silent hypoxemia in a minimal closed-loop model of the respiratory rhythm generator

Silent hypoxemia, or “happy hypoxia,” is a puzzling phenomenon in which patients who have contracted COVID-19 exhibit very low oxygen saturation ( $$\text {SaO}_2$$ < 80%) but do not experience discomfort in breathing. The mechanism by which this blunted response to hypoxia occurs is unknown. We have previously shown that a computational model of the respiratory neural network...

A computational neural model that incorporates both intrinsic dynamics and sensory feedback in the Aplysia feeding network

Studying the nervous system underlying animal motor control can shed light on how animals can adapt flexibly to a changing environment. We focus on the neural basis of feeding control in Aplysia californica. Using the Synthetic Nervous System framework, we developed a model of Aplysia feeding neural circuitry that balances neurophysiological plausibility and computational...

Empirical modeling and prediction of neuronal dynamics

Mathematical modeling of neuronal dynamics has experienced a fast growth in the last decades thanks to the biophysical formalism introduced by Hodgkin and Huxley in the 1950s. Other types of models (for instance, integrate and fire models), although less realistic, have also contributed to understand neuronal dynamics. However, there is still a vast volume of data that have not...

Stability against fluctuations: a two-dimensional study of scaling, bifurcations and spontaneous symmetry breaking in stochastic models of synaptic plasticity

Stochastic models of synaptic plasticity must confront the corrosive influence of fluctuations in synaptic strength on patterns of synaptic connectivity. To solve this problem, we have proposed that synapses act as filters, integrating plasticity induction signals and expressing changes in synaptic strength only upon reaching filter threshold. Our earlier analytical study...

Fluctuation–response relations for integrate-and-fire models with an absolute refractory period

We study the problem of relating the spontaneous fluctuations of a stochastic integrate-and-fire (IF) model to the response of the instantaneous firing rate to time-dependent stimulation if the IF model is endowed with a non-vanishing refractory period and a finite (stereotypical) spike shape. This seemingly harmless addition to the model is shown to complicate the analysis put...

Four attributes of intelligence, a thousand questions

Jeff Hawkins is one of those rare individuals who speaks the languages of both AI and neuroscience. In his recent book, "A Thousand Brains: A New Theory of Intelligence", Hawkins proposes that current learning algorithms lack four attributes which will be necessary for true machine intelligence. Here we demonstrate that a minimal learning system which satisfies all four points...

Face detection based on a human attention guided multi-scale model

Multiscale models are among the cutting-edge technologies used for face detection and recognition. An example is Deformable part-based models (DPMs), which encode a face as a multiplicity of local areas (parts) at different resolution scales and their hierarchical and spatial relationship. Although these models have proven successful and incredibly efficient in practical...

Divisive normalization processors in the early visual system of the Drosophila brain

Divisive normalization is a model of canonical computation of brain circuits. We demonstrate that two cascaded divisive normalization processors (DNPs), carrying out intensity/contrast gain control and elementary motion detection, respectively, can model the robust motion detection realized by the early visual system of the fruit fly. We first introduce a model of elementary...

The Bcm rule allows a spinal cord model to learn rhythmic movements

Currently, it is accepted that animal locomotion is controlled by a central pattern generator in the spinal cord. Experiments and models show that rhythm generating neurons and genetically determined network properties could sustain oscillatory output activity suitable for locomotion. However, current central pattern generator models do not explain how a spinal cord circuitry...

Bio-inspired, task-free continual learning through activity regularization

The ability to sequentially learn multiple tasks without forgetting is a key skill of biological brains, whereas it represents a major challenge to the field of deep learning. To avoid catastrophic forgetting, various continual learning (CL) approaches have been devised. However, these usually require discrete task boundaries. This requirement seems biologically implausible and...

Periodic solutions in next generation neural field models

We consider a next generation neural field model which describes the dynamics of a network of theta neurons on a ring. For some parameters the network supports stable time-periodic solutions. Using the fact that the dynamics at each spatial location are described by a complex-valued Riccati equation we derive a self-consistency equation that such periodic solutions must satisfy...

Toward metacognition: subject-aware contrastive deep fusion representation learning for EEG analysis

We propose a subject-aware contrastive learning deep fusion neural network framework for effectively classifying subjects’ confidence levels in the perception of visual stimuli. The framework, called WaveFusion, is composed of lightweight convolutional neural networks for per-lead time–frequency analysis and an attention network for integrating the lightweight modalities for...

Extreme image transformations affect humans and machines differently

Some recent artificial neural networks (ANNs) claim to model aspects of primate neural and human performance data. Their success in object recognition is, however, dependent on exploiting low-level features for solving visual tasks in a way that humans do not. As a result, out-of-distribution or adversarial input is often challenging for ANNs. Humans instead learn abstract...