The reverse seasonal flooding that resulted from the construction of the Three Gorges Project has induced a drastic degradation of draw-down zone vegetation and the seed bank in the reservoir. The composition and distribution of seed banks and their similarities to standing vegetation were determined through field investigations and germination experiments on the vegetation as...
Patchy habitats often enhance species coexistence and, consequently, abundance of each species. The present study examined two indicators of potential habitats for anemonefish Amphiprion frenatus: total area of dark-colored patch reefs that are detectable on an aerial image with image analysis software, and total area of tall patch reefs (>1.5 m in height) that are detectable on...
Mast seeding, the synchronous intermittent production of large seed crops in populations of perennial plants, is a widespread and widely studied phenomenon. Economy of scale has been demonstrated to provide the ultimate selection factor driving the evolution of masting, for example, in terms of the predator-satiation and pollination-efficiency hypotheses; however, its...
Large-scale land abandonment and reconstruction activity has altered the ecosystem structure in the evacuation area for the Fukushima Daiichi power plant accident in 2011. Despite social concerns about changes in the avian assemblages that occurred after the accident, publicly accessible data are quite limited. We engaged in acoustic monitoring of birds using digital voice...
Lake Inba is one of the most eutrophic lakes in Japan. This data paper reports the abundance of phytoplankton species sampled biweekly from April 1986 to March 2016 at four stations in Lake Inba. Monitoring has been carried out by Chiba Prefectural Government, and phytoplankton count data have been collected since 1986. A total of 340 phytoplankton species were identified and...
Climate change is affecting the composition and functioning of ecosystems across the globe. Mountain ecosystems are particularly sensitive to climate warming since their biota is generally limited by low temperatures. Cryptogams such as lichens and bryophytes are important for the biodiversity and functioning of these ecosystems, but have not often been incorporated in vegetation...
Natural systems are often complex and dynamic (i.e. nonlinear), making them difficult to understand using linear statistical approaches. Linear approaches are fundamentally based on correlation. Thus, they are ill-posed for dynamical systems, where correlation can occur without causation, and causation may also occur in the absence of correlation. “Mirage correlation” (i.e., the...
Tree hollows often harbor animals and microorganisms, thereby storing nutritive resources derived from their biological activities. The outflows from tree hollows can create unique microenvironments, which may affect communities of epiphytic organisms on trunk surfaces below the hollows. In this study, we tested whether the species richness and composition of epiphytic bryophytes...
The diversity of native non-crop (weed) vegetation in agricultural landscapes can provide arthropod natural enemies with food sources and shelter, thus improving natural pest control and reducing dependence on chemical pesticides. Moreover, native plants to a region are uniquely positioned to provide cultural ecosystem services such as wild food and wild medicinal plants, as well...
Elucidating the mechanism shaping the spatial variations of traits has long been a central concern of evolutionary biologists. Geographic clines of allele/morph frequencies along environmental gradients are suggested to be established and maintained by the balancing of two opposing evolutionary forces, namely selection that generates spatial differentiation in morph frequencies...
In 2016, Ecological Research (ER) celebrated its 30th anniversary. ER’s goal is to be the leading ecological, evolutionary, and biodiversity journal in Asia. This article introduces the development of ER, improvements to its editorial system and their outcomes, and the strategies designed to achieve this goal. ER has already become a leading comprehensive and international...
Protected areas function as a lifeboat that can preserve the origins and maintenance of biodiversity. We assessed the representativeness of biodiversity in existing protected areas in Japan using a distribution dataset and phylogenetic tree for 5565 Japanese vascular plant species. We first examined the overlap of species distribution with the existing protected areas and...
This paper reports seasonal data regarding leaf litter for 14 deciduous broad-leaved species and one evergreen coniferous species as well as leaf area index (LAI) data for the 14 deciduous broad-leaved species in a cool-temperate deciduous broad-leaved forest in Japan. The seasonal leaf biomass of various tree species is important for accurately evaluating ecosystem functions...
This paper reports seasonal data regarding leaf number, leaf length and width, leaf area, leaf angle, and SPAD (leaf chlorophyll content index) for 11 genera (12 species) in a cool-temperate deciduous broadleaved forest in Japan. Knowing the leaf phenology of tree species is important for accurately evaluating the temporal variability of ecosystem functions (e.g., photosynthesis...
The primary objective of this paper was to estimate how the mass of Silver fir (Abies alba Mill.) and Scots pine (Pinus sylvestris L.) deadwood in two decay classes affected biochemical processes and the accumulation of soil organic matter, as well as the extent of this impact. We evaluated deadwood mass, as well as the biological activity and influence of the distance from...
The evergreen oak Quercus glauca often dominates secondary broadleaved forests in Western Japan. It is regarded as a mid-successional species, whose diameter and height growth fall between those of early- and late-successional species. Despite the ecological importance of this evergreen oak in the secondary succession of the evergreen broadleaved forest zone in Japan, tree...
Proportions of specialist and generalist primary parasitoids have been described by the resource breadth and the trade-off hypothesis. These alternative hypotheses predict either decreased or increased, respectively, parasitism rate of shared aphid species by specialist parasitoids. We tested both hypotheses and the confounding effects of landscape structure and agricultural...
Plant-mediated interactions between belowground (BG) and aboveground (AG) herbivores have received increasing interest recently. However, the molecular mechanisms underlying ecological consequences of BG–AG interactions are not fully clear yet. Herbivore-induced plant defenses are complex and comprise phytohormonal signaling, gene expression and production of defensive compounds...
We assembled a dataset tabulating the weights of Thai and Indonesian mangrove trees that we measured between 1982 and 2001. We selected four Thai study sites in Phang Nga, Ranong, Satun, and Trat Provinces and one site in eastern Indonesia on Halmahera Island in Maluku Province. The stands in Ranong Province and on Halmahera Island were in primary forests with data collected in...
Microscopic crustaceans (cladocerans and copepods) and rotifers are the principal zooplankton components of the pelagic food webs in lakes. They play important ecological roles, functioning as essential links between primary producers and planktivorous fish. Individuals zooplankton are important nodes of matter flow in pelagic ecosystems. The zooplankton community structure can...
Community ecology is traditionally species-based and assumes that species comprise identical individuals. However, intraspecific variation is ubiquitous in nature because of ontogenetic growth and critical in food-we dynamics. To understand individual interaction-mediated food webs, researchers have recently focused on body size as the most fundamental biological aspect and...
This paper describes the flora of habitat-forming seaweeds (fucoids and temperate kelps) at 7673 sites of the Japanese coast encompassing its warm to cold temperate zone, recorded from 1887 to 2014. The data set includes 86 species (21,168 presence and 20,845 absence records), compiled from 355 literature sources, most of which were written in Japanese and published as grey...
The world’s freshwater molluscan fauna is facing unprecedented threats from habitat loss and degradation. Declines in native populations are mostly attributed to the human impact, which results in reduced water quality. The objectives of our survey were to analyse the structure of the mollusc communities in a medium-sized lowland river and to determine the most important...